2024-04-09 15:25:42 +00:00
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import numpy as np
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from mpi4py import MPI
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2024-04-16 21:21:56 +00:00
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from matrix_mpi import MatrixMPI
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from vector_mpi import VectorMPI
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2024-04-09 15:25:42 +00:00
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np.random.seed(0)
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###############
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# Setting up MPI
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comm = MPI.COMM_WORLD
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rank = comm.Get_rank()
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size = comm.Get_size()
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for i0 in range(size):
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if i0 == rank:
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print(f"Hello from rank {i0} of size {size}!")
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comm.Barrier()
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# Testing the vector class
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comm.Barrier()
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if rank == 0:
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print("\n\nTesting the vector class --------------(output only from rank 0)---------------------\n\n")
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###############
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### 1a Initialization
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if rank == 0:
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print("Start 1a initialization")
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# from list
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n_x1 = 10
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x1_list = [i0 for i0 in
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range(n_x1)] # must work for 4 ranks, too, so even if entries are not evenly distributable between ranks
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vec_x1 = VectorMPI(x1_list)
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# from numpy array
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n_x2 = 10000
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x2_list = np.random.uniform(0, 1, n_x2)
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vec_x2 = VectorMPI(x2_list)
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if rank == 0:
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print("End 1a\n")
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comm.Barrier()
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### 1b __str__ function, string representation
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if rank == 0:
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print("Start 1b string representation")
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vec_x1_str = str(vec_x1)
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vec_x2_str = str(vec_x2)
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if rank == 0:
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print(f"vec_x1 values: {vec_x1_str}")
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print(f"vec_x2 values: {vec_x2_str}")
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print("End 1b\n")
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comm.Barrier()
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### 1c shape and transpose
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if rank == 0:
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print("Start 1c shape and transpose")
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# shape property of the vector
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vec_x1_shape = vec_x1.shape()
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vec_x2_T_shape = vec_x2.T().shape()
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vec_x2_T_T_shape = vec_x2.T().T().shape()
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if rank == 0:
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print(f"vec_x1 has shape {vec_x1_shape} | must be ({n_x1},1)") # Hint: numpy.reshape
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# transposition (property) of the vector, only "cosmetic" change
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print(f"vec_x2.T() has shape {vec_x2_T_shape} | must be (1,{n_x2})")
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print(f"vec_x2.T().T() has shape {vec_x2_T_T_shape} | must be ({n_x2},1)")
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print("End 1c\n")
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comm.Barrier()
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2024-04-16 21:21:56 +00:00
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### 1d addition and subtraction
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if rank == 0:
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2024-04-16 21:21:56 +00:00
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print("Start 1d addition and subtraction ")
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# initialization
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n_a = 10
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n_b = 10
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a_list = [i0 for i0 in range(n_a)]
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b_list = [1 / (i0 + 1) for i0 in range(n_b)]
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a = VectorMPI(a_list)
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b = VectorMPI(b_list)
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2024-04-09 15:25:42 +00:00
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# computation
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x = a + b
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y = a - b
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numpy_x_compare_norm = (x - VectorMPI(np.array(a_list) + np.array(b_list))).norm()
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numpy_y_compare_norm = (y - VectorMPI(np.array(a_list) - np.array(b_list))).norm()
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if rank == 0:
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print(f"norm(a + b - numpy) = {numpy_x_compare_norm} | must be < 1e-8")
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print(f"norm(a - b - numpy) = {numpy_x_compare_norm} | must be < 1e-8")
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try:
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x_false = a + b.T()
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except ValueError as e:
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if rank == 0:
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print("The correct result is this error: " + str(e))
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else:
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if rank == 0:
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print("ERROR: It is required to raise a system error, e. g., ValueError, since dimensions mismatch!")
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try:
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x_false = a - b.T()
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except ValueError as e:
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if rank == 0:
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print("The correct result is this error: " + str(e))
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else:
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if rank == 0:
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print("ERROR:It is required to raise a system error, e. g., ValueError, since dimensions mismatch!")
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if rank == 0:
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print("End 1d\n")
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comm.Barrier()
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### 1e multiplication
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if rank == 0:
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print("Start 1e multiplication")
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2024-04-16 21:21:56 +00:00
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# initialization
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n_a = 10
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n_b = 10
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a_list = [i0 for i0 in range(n_a)]
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b_list = [1 / (i0 + 1) for i0 in range(n_b)]
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a = VectorMPI(a_list)
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b = VectorMPI(b_list)
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# computation with vectors
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x = a.T() * b # scalar
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y = a * b # vector
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numpy_x_compare_norm = np.linalg.norm(x - np.sum(np.array(a_list) * np.array(b_list)))
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numpy_y_compare_norm = (y - VectorMPI(np.array(a_list) * np.array(b_list))).norm()
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# numpy_z_compare_norm = (z - MatrixMPI(comm,np.outer(np.array(a_list),np.array(b_list)))).norm()
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if rank == 0:
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print(f"norm(a.T() * b - numpy) = {numpy_x_compare_norm} | must be < 1e-8")
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print(f"norm(a * b - numpy) = {numpy_y_compare_norm} | must be < 1e-8")
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# print(f"norm(b * a.T() - numpy) = \n{numpy_z_compare_norm} | must be 1e-8")
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# computation with scalars
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x = a * 5
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y = 0.1 * b.T()
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numpy_x_compare_norm = (x - VectorMPI(np.array(a_list) * 5)).norm()
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numpy_y_compare_norm = (y - VectorMPI(np.array(b_list) * 0.1).T()).norm()
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if rank == 0:
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print(f"norm(a * 5 - numpy) = {numpy_x_compare_norm} | must be < 1e-8")
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print(f"norm(0.1 * b.T() - numpy) = {numpy_y_compare_norm} | must be < 1e-8")
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print("End 1e\n")
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comm.Barrier()
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2024-04-16 21:21:56 +00:00
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### 1f division
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if rank == 0:
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print("Start 1f division")
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# initialization
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n_a = 10
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n_b = 10
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a_list = [i0 for i0 in range(n_a)]
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b_list = [1 / (i0 + 1) for i0 in range(n_b)]
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a = VectorMPI(a_list)
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b = VectorMPI(b_list)
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2024-04-09 15:25:42 +00:00
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# computation with vectors
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x = a / b
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y = a / 5
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2024-04-16 21:21:56 +00:00
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numpy_x_compare_norm = (x - VectorMPI(np.array(a_list) / np.array(b_list))).norm()
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numpy_y_compare_norm = (y - VectorMPI(np.array(a_list) / 5)).norm()
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if rank == 0:
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print(f"norm(a / b - numpy) = {numpy_x_compare_norm} | must be < 1e-8")
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print(f"norm(a / 5 - numpy) = {numpy_y_compare_norm} | must be < 1e-8")
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print("End 1f\n")
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comm.Barrier()
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### 1g norm
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if rank == 0:
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print("Start 1g norm")
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2024-04-16 21:21:56 +00:00
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# initialization
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2024-04-09 15:25:42 +00:00
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a_list = [1 / (i0 + 1) for i0 in range(10)]
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a = VectorMPI(a_list)
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2024-04-09 15:25:42 +00:00
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# computation
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a_norm = a.norm()
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a_normalized = a.normalize()
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a_normalized_str = str(a_normalized)
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2024-04-16 21:21:56 +00:00
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numpy_comparison_norm = (a_normalized - VectorMPI(np.array(a_list) / np.linalg.norm(a_list))).norm()
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if rank == 0:
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print(f"a_norm = {a_norm} | must be {np.linalg.norm(a_list)}")
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print(f"norm(a_normalize-np.a_normalize) = {numpy_comparison_norm} | must be < 1e-8")
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print("End 1g\n")
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comm.Barrier()
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### 1h negation
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if rank == 0:
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print("Start 1h negation")
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2024-04-16 21:21:56 +00:00
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# initialization
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a_list = [1 / (i0 + 1) for i0 in range(10)]
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a = VectorMPI(a_list)
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2024-04-09 15:25:42 +00:00
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# computation
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x = -a
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x_str = str(x)
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if rank == 0:
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print(f"-a = {x_str} | must be {-np.array(a_list)}")
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print("End 1h\n")
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comm.Barrier()
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### 1i manipulation
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if rank == 0:
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print("Start 1i manipulation")
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2024-04-16 21:21:56 +00:00
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# initialization
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2024-04-09 15:25:42 +00:00
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n_a = 10
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a_list = [1 / (i0 + 1) for i0 in range(n_a)]
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a = VectorMPI(a_list)
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a_idx = [1, 2, 9, 7, 8]
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a_values = a[a_idx]
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if rank == 0:
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print(
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f"a[{str(a_idx)}] = {str(a_values)} | must be {np.array(a_list).reshape(n_a, 1)[np.array(a_idx)].reshape(len(a_idx), )}")
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a[a_idx] = [-1, -1, -1, -1, -1]
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a_str = str(a)
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np_a = np.array(a_list)
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np_a[a_idx] = [-1, -1, -1, -1, -1]
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if rank == 0:
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print(f"a = {a_str} | must be {np_a}")
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print("End 1i\n")
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comm.Barrier()
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###############
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# Testing the matrix class
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comm.Barrier()
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if rank == 0:
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print("\n\nTesting the matrix class -----------------------------------\n\n")
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###############
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### 2a Initialization
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if rank == 0:
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print("Start 2a initialization")
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n_a1 = 10
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n_a2 = 5
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a_list = np.array([[(i0 + 1) * (i1 + 1) for i0 in range(n_a1)] for i1 in range(n_a2)])
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A = MatrixMPI(a_list)
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B = MatrixMPI(structure="tridiagonal", data=[-1, 2, -1], n=12)
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c_list = [i0 for i0 in range(n_a1 * n_a1)]
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C = MatrixMPI(c_list, shape=(n_a1, n_a1))
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D = MatrixMPI(structure="tridiagonal", data=[-1, 2, -1], n=50)
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# D = MatrixMPI(model="sheet1ex1", n=50)
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if rank == 0:
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print("End 2a\n")
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comm.Barrier()
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### 2b __str__ function, string representation
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if rank == 0:
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print("Start 2b string representation")
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# print(B.__str__(full = True))
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A_str = str(A)
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B_str = str(B)
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C_str = str(C)
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D_str = str(D)
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if rank == 0:
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print(f"Matrix A (numbers):\n{A_str}")
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print(f"Matrix B (tridiagonal):\n{B_str}")
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print(f"Matrix C (list of numbers):\n{C_str}")
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print(f"Matrix D (sheet1ex1):\n{D_str}")
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print("End 2b\n")
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comm.Barrier()
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### 2c shape and transpose
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if rank == 0:
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print("Start 2c shape and transpose")
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# Initialization
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A_shape = A.shape()
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A_T_shape = A.T().shape()
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A_T_T_shape = A.T().T().shape()
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if rank == 0:
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print(f"A has shape {A_shape} | must be {np.array(a_list).shape}")
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print(f"A.T() has shape {A_T_shape} | must be {np.array(a_list).T.shape}")
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print(f"A.T().T() has shape {A_T_T_shape} | must be {np.array(a_list).T.T.shape}")
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print("End 2c\n")
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comm.Barrier()
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# ### DEBUG norms ###
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# mat = np.array([[(i0+1)*(i1+1) for i0 in range(10)] for i1 in range(5)])
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# local_max_each_row = np.amax(np.abs(mat),axis=1)
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# if rank == 0:
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# print(f"Matrix\n{str(mat)}\nlocal max each row {str(local_max_each_row)}")
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# # frobenius norm
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2024-04-16 21:21:56 +00:00
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# A = MatrixMPI(comm,mat)
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# a_norm_fro = A.norm("frobenius")
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# if rank == 0:
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# print(f"A.norm('frobenius') = {a_norm_fro} | must be {np.linalg.norm(np.array([[(i0+1)*(i1+1) for i0 in range(10)] for i1 in range(5)]),'fro')}")
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# # row sum norm
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# a_norm_row = A.norm("row sum")
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# if rank == 0:
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2024-04-16 21:21:56 +00:00
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# print(f"A.norm('row sum') = {a_norm_row} | must be {np.max(local_max_each_row)}")
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# # col sum norm
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2024-04-16 21:21:56 +00:00
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### 2d addition and subtraction
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2024-04-09 15:25:42 +00:00
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if rank == 0:
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2024-04-16 21:21:56 +00:00
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print("Start 2d addition and subtraction ")
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2024-04-09 15:25:42 +00:00
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# Initialization
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n = 10
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2024-04-16 21:21:56 +00:00
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A = MatrixMPI(structure="diagonal", data=[3], offset=0, n=n)
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A21 = MatrixMPI(structure="diagonal", data=[-1], offset=-1, n=n)
|
|
|
|
A12 = MatrixMPI(structure="diagonal", data=[-1], offset=+1, n=n)
|
|
|
|
B = MatrixMPI(structure="diagonal", data=[1], offset=0, n=n)
|
2024-04-09 15:25:42 +00:00
|
|
|
# computation
|
|
|
|
C = A + A21 + A12 - B
|
2024-04-16 21:21:56 +00:00
|
|
|
D = C - MatrixMPI(structure='tridiagonal', data=[-1, 2, -1], n=n)
|
2024-04-09 15:25:42 +00:00
|
|
|
d_norm = D.norm()
|
|
|
|
A_str = str(5 + A - 3)
|
|
|
|
if rank == 0:
|
|
|
|
print(f"norm(A + A21 + A12 - B - tridiag) = {d_norm} | must be < 1e-8")
|
|
|
|
print(f"5+A-3 = \n{A_str}")
|
|
|
|
print("End 2d\n")
|
|
|
|
comm.Barrier()
|
|
|
|
|
|
|
|
### 2e multiplication
|
|
|
|
if rank == 0:
|
|
|
|
print("Start 2e multiplication")
|
|
|
|
# initialization
|
|
|
|
n = 10
|
|
|
|
a_mat = np.array([[(i0 + 1) / (i1 + 1) for i1 in range(8)] for i0 in range(n)])
|
|
|
|
b_mat = np.array([[(i0 + 1) / (i1 + 1) for i1 in range(n)] for i0 in range(8)])
|
|
|
|
c_mat = np.array([[(i0 + 1) / (i1 + 1) for i1 in range(n)] for i0 in range(n)])
|
|
|
|
d_mat = np.array([[(i0 + 1) / (i1 + 1) for i1 in range(17)] for i0 in range(n)])
|
2024-04-16 21:21:56 +00:00
|
|
|
A = MatrixMPI(a_mat)
|
|
|
|
B = MatrixMPI(b_mat)
|
|
|
|
C = MatrixMPI(c_mat)
|
|
|
|
D = MatrixMPI(d_mat)
|
2024-04-09 15:25:42 +00:00
|
|
|
x_vec = np.array([i0 + 1 for i0 in range(n)])
|
|
|
|
y_vec = np.array([n * (i0 + 1) for i0 in range(n)])
|
2024-04-16 21:21:56 +00:00
|
|
|
x = VectorMPI(x_vec)
|
|
|
|
y = VectorMPI(y_vec)
|
2024-04-09 15:25:42 +00:00
|
|
|
# computation matrix scalar
|
2024-04-16 21:21:56 +00:00
|
|
|
norm5 = (5 * A - MatrixMPI(5 * np.array(a_mat))).norm()
|
2024-04-09 15:25:42 +00:00
|
|
|
# computation matrix vector
|
2024-04-16 21:21:56 +00:00
|
|
|
norm6 = (C * x - VectorMPI(np.array(c_mat) @ np.array(x_vec))).norm()
|
|
|
|
norm7 = (D.T() * x - VectorMPI(np.array(d_mat).T @ np.array(x_vec))).norm()
|
2024-04-09 15:25:42 +00:00
|
|
|
y_shape = (D.T() * x).shape()
|
|
|
|
if rank == 0:
|
|
|
|
print(f"Norm of (5*A - np.(5*A)) is {norm5} | must be < 1e-8")
|
|
|
|
print(f"Norm of (C*x - np.(C*x)) is {norm6} | must be < 1e-8")
|
|
|
|
print(f"Norm of (D.T*x - np.(D.T*x)) is {norm7} | must be < 1e-8 | shape(D.T*x) is {y_shape} | must be (17,1)")
|
|
|
|
# computation matrix multiplication
|
|
|
|
A_str = str(A)
|
|
|
|
B_str = str(B)
|
|
|
|
if rank == 0:
|
|
|
|
print(f"DEBUG: A\n{A_str}\nDEBUG: B\n{B_str}")
|
2024-04-16 21:21:56 +00:00
|
|
|
norm1 = (A * B - MatrixMPI(np.array(a_mat) @ np.array(b_mat))).norm()
|
|
|
|
norm2 = (A.T() * A - MatrixMPI(np.array(a_mat).T @ np.array(a_mat))).norm()
|
|
|
|
norm3 = (A * A.T() - MatrixMPI(np.array(a_mat) @ np.array(a_mat).T)).norm()
|
|
|
|
norm4 = (B.T() * A.T() - MatrixMPI(np.array(b_mat).T @ np.array(a_mat).T)).norm()
|
2024-04-09 15:25:42 +00:00
|
|
|
if rank == 0:
|
|
|
|
print(f"Norm of (A*B - np.(A*B)) is {norm1} | must be < 1e-8")
|
|
|
|
print(f"Norm of (A.T()*A - np(A.T()*A)) is {norm2} | must be < 1e-8")
|
|
|
|
print(f"Norm of (A*A.T() - np(A*A.T())) is {norm3} | must be < 1e-8")
|
|
|
|
print(f"Norm of (B.T()*A.T() - np.(B.T()*A.T())) is {norm4} | must be < 1e-8")
|
|
|
|
print("End 2e\n")
|
|
|
|
comm.Barrier()
|
|
|
|
|
2024-04-16 21:21:56 +00:00
|
|
|
### 2f division
|
2024-04-09 15:25:42 +00:00
|
|
|
if rank == 0:
|
2024-04-16 21:21:56 +00:00
|
|
|
print("Start 2f division")
|
2024-04-09 15:25:42 +00:00
|
|
|
# initialization
|
2024-04-16 21:21:56 +00:00
|
|
|
A = MatrixMPI(a_mat)
|
2024-04-09 15:25:42 +00:00
|
|
|
# computation
|
2024-04-16 21:21:56 +00:00
|
|
|
print(f"Norm of (A/5 - np.(A/5)) is {(A / 5 - MatrixMPI(np.array(a_mat) / 5)).norm()} | must be < 1e-8")
|
2024-04-09 15:25:42 +00:00
|
|
|
if rank == 0:
|
2024-04-16 21:21:56 +00:00
|
|
|
print("End 2f\n")
|
2024-04-09 15:25:42 +00:00
|
|
|
comm.Barrier()
|
|
|
|
|
|
|
|
### 2g norm
|
|
|
|
if rank == 0:
|
2024-04-16 21:21:56 +00:00
|
|
|
print("Start 2g norm")
|
|
|
|
A = MatrixMPI(structure="tridiagonal", n=50, data=[-1, 2, -1])
|
2024-04-09 15:25:42 +00:00
|
|
|
print(f"Frobenius norm of tridiagonal matrix: {A.norm('frobenius')} | must be 17.263")
|
2024-04-16 21:21:56 +00:00
|
|
|
print(f"Row sum norm of tridiagonal matrix: {A.norm('row sum')} | must be 4")
|
|
|
|
print(f"Col sum norm of tridiagonal matrix: {A.norm('col sum')} | must be 4")
|
2024-04-09 15:25:42 +00:00
|
|
|
if rank == 0:
|
2024-04-16 21:21:56 +00:00
|
|
|
print("End 2g\n")
|
2024-04-09 15:25:42 +00:00
|
|
|
comm.Barrier()
|
|
|
|
|
|
|
|
### 2h negation
|
|
|
|
if rank == 0:
|
2024-04-16 21:21:56 +00:00
|
|
|
print("Start 2h negation")
|
|
|
|
A = MatrixMPI(structure="tridiagonal", n=50, data=[-1, 2, 1])
|
2024-04-09 15:25:42 +00:00
|
|
|
print(f"Norm of (A + (-A)) is {(A + (-A)).norm('frobenius')} | must be < 1e-8")
|
|
|
|
if rank == 0:
|
2024-04-16 21:21:56 +00:00
|
|
|
print("End 2h\n")
|
2024-04-09 15:25:42 +00:00
|
|
|
comm.Barrier()
|
|
|
|
|
|
|
|
### 2i manipulation
|
|
|
|
if rank == 0:
|
2024-04-16 21:21:56 +00:00
|
|
|
print("Start 2i manipulation")
|
|
|
|
A = MatrixMPI(structure="tridiagonal", n=10, data=[-1, 2, 1])
|
|
|
|
A[1, 1] = 4
|
|
|
|
A[[1, 2, 3], 2] = [-5, -10, 100]
|
2024-04-09 15:25:42 +00:00
|
|
|
print(str(A))
|
|
|
|
if rank == 0:
|
2024-04-16 21:21:56 +00:00
|
|
|
print("End 2i\n")
|
2024-04-09 15:25:42 +00:00
|
|
|
comm.Barrier()
|